Changelog

Source: NEWS.md

CNVMetrics 1.5.1

NEW FEATURES

  • processSim() method generates simulated samples with copy number profiles derived from a specific sample.

SIGNIFICANT USER-VISIBLE CHANGES

  • None

BUG FIXES

  • None

CNVMetrics 0.1.6

NEW FEATURES

  • calculateLog2ratioMetric() method enables log2 ratio metric calculation using similar workflow than calculateOverlapRegionsMetric() method.

SIGNIFICANT USER-VISIBLE CHANGES

  • plotMetric() replaces plotOverlapMetric() method. The new method can plot all metrics (state call metrics and log2 ratio metrics).
  • Vignette section ‘Workflow for metrics calculated using the level of amplification/deletion’ is complete.
  • New citing section in README and vignette refering to published F1000Research poster (http://www.doi.org/10.7490/f1000research.1118704.1).
  • Instead of calculating distance, log2 ratio metrics are calculated distance-based metrics (1/(1+distance)).

BUG FIXES

  • None

CNVMetrics 0.1.4

NEW FEATURES

  • None

SIGNIFICANT USER-VISIBLE CHANGES

BUG FIXES

  • None

CNVMetrics 0.1.3

NEW FEATURES

  • None

SIGNIFICANT USER-VISIBLE CHANGES

  • plotOneOverlapMetric() method has a new argument silent=TRUE so that the plot is not drawn by default.

BUG FIXES

  • plotOneOverlapMetric() method now uses sample distance for clustering as default clustering method.

CNVMetrics 0.1.2

NEW FEATURES

  • plotOneOverlapMetric() method enables plotting result of overlapping metric calculation.

SIGNIFICANT USER-VISIBLE CHANGES

BUG FIXES

  • None

CNVMetrics 0.1.1

NEW FEATURES

  • Added a NEWS.md file to track changes to the package.
  • calculateOverlapRegionsMetric() method enables calculation of similarity metrics using overlapping amplified/deleted regions.

SIGNIFICANT USER-VISIBLE CHANGES

  • None.

BUG FIXES

  • None